Web Page
CaveCrawler
Perry, A., McGaugh, S.E., Keene, A.C. and Blackmon, H.
Record Number:
5996
Year:
2022
Notes:
See Perry et al (2022) for a full description of the CaveCrawler bioinforamtic tools
CaveCrawler: an interactive analysis suite for cavefish bioinformatics
G3 12(8), jkac132 (https://doi.org/10.1093/g3journal/jkac132)
Abstract:
CaveCrawler is a reactive web interface for bioinformatic analysis of data in the Mexican tetra (Astyanax mexicanus), an emerging evolutionary model organism.
CaveCrawler consists of 4 modules: a Gene Search page for querying data about specific genes, a Transcription page for finding genes whose transcriptional levels differ between samples, a Population Genetics page for investigating statistics on diversity and selection, and a GO Term Info page for identifying and obtaining information on GO terms-of-interest.
Finally, there is the Data Sources module, which describes the publications from which each dataset was obtained, as well as the dates for Ensembl and UniProt-derived information.
To request that new data be integrated into CaveCrawler, please email Heath Blackmon at hblackmon@bio.tamu.edu or Alex Keene at akeene@bio.tamu.edu
Times Cited:
1
Relevent Species: